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Celestin Apprentice 5
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fastDNAml.infile
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Text File
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1996-07-05
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13KB
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204 lines
6 1701 F
Tt.marit ??UAUAUGGA GGGUUUGAUC CUGGCUCAGG GUGAACGCUG GCGGCG-UGC -CUAACACAU
Tmc.rose ?GGGGAUGGA GAGUUUGAUC CUGGCUCAGG GGGAACGCUG GCGGCG-UGC -CUAAUGCAU
Cfx.aura ??ACAAUGnA gAGUUUGAUC CUGGCUCAGG ACGAacgcUG GCGGCG-UGC -CUAAUGCAU
Ag.tumef CUCAACUUGA GAGUUUGAUC CUGGCUCAGA ACGAACGCUG GCGGCA-GGC -UUAACACAU
Ps.testo ?CGAACUAUA GAGUUUGAUC CUGGCUCAGA UUGAACGCUG GCGGCA-UGC -UUUACACAU
E.coli ??AAAUUGAA GAGUUUGAUC AUGGCUCAGA UUGAACGCUG GCGGCA-GGC -CUAACACAU
GCAAGUCGAG CGGG--GGA- -------A-A CUCCCUUCG- GGGAGGAG-- --------UA
GCAAGUCGGA cggg--ang- ---------c acgcncucu- ggcguG---- --------CC
GCAAGUCGAA CGcA--GCA- ---------- ---GGCgUG- CCU------- --------GG
GCAAGUCGAA CGCC------ ---------- ---CCGCAA- GG-------- ----------
GCAAGUCGAA CGGUAACAG- ---------- --GUCUUCG- GAU------- -------GCU
GCAAGUCGAA CGGUAACAG- --------GA AGAAGCUUG- CUUCUUU--- -------GCU
CCC-AGCGGC GGACGGgUGA GUAACACgUG GgUAACCUGc CCUCCGgAGG GGGAUAACcA
GAC-cguggC GGACGGGUGC GUAACACGUG GGGaacccuc ccgggUGCGG GGGAUAACCC
CUG-CGUGGC GAACGGCUGA GGAACACGUG GGUgACCUGC CCCGGAGUGG GGGAUACCCC
-GG-AGUGGC AGACGGGUGA GUAACGCGUG GGA-AUCUAC CGUGCCCUGC GGAAUAGCUC
GACGAGUGGC GAACGGGUGA GUAAUACAUC GGA-ACGUGC CUAGUAGUGG GGGAUAACUA
GACGAGUGGC GGACGGGUGA GUAAUGUCUG GGA-AACUGC CUGAUGGAGG GGGAUAACUA
GGGGAAACCC UGGCUAAUAC CCCAUACGCU CCAUC---AA C-GCAA-GUU --GGUGGAG-
GGGGAAACUC GGGCUAAUAC CCCAUACGCU UGGCU---GG C-GGUGGGCC --GGCCAAG-
GUCGAaAGAC GgGACAAUCC CGCAUACGC- ---------U C-gACG-GA- --------G-
CGGGAAACUG GAAUUAAUAC CGCAUACG-- --------CC C-UACG-GGG ----------
CUCGAAAGAG UAGCUAAUAC CGCAUGAG-- --------AU C-UACG-GAU ----------
CUGGAAACGG UAGCUAAUAC CGCAUAAC-- --------GU C-GCAA-GAC ----------
GAAA-ggggC -----gUUU- --GCCCCGCC GGAGGAgggg CCCGCGGCCC AUCAGGUAGU
GAAA-GGCGC AG---GCGA- CUGUGCUGUG CUCGGAGGGC CCUGCGGCCU AUCAGCUAGA
GAAA-GCC-- ------gaA- ----GGCGCU CUGnnAGGGG CCnGCGGCCC AUCAGGUAGU
GAAA-GA--- -----UUUA- -----UCGGG GUAUGAUGAG CCCGCGUUGG AUUAGCUAGU
GAAA-GCAGG GGACCUUCGG GCCUUGUGCU ACUAGAGCGG CUGAUGGCAG AUUAGGUAGU
CAAA-GAGGG GGACCUUCGG GCCUCUUGCC AUCGGAUGUG CCCAGAUGGG AUUAGCUAGU
UGGUGGGGUA ACGGCCCACC AAGCCGACGA CGGGUAGCCG GCCUGAGAGG GUGGUCGGCC
CGGUAGGGUA ACGGCCUACC GUGGCGAUGA CGGGUAGCUG GUCUGAGAGG AUGGCCAGCC
UGGUGUGGUA ACGGCGCACC AAGCCAAUGA CGGGUACCCG GUCUGAGAGG ACGACCGGgc
UGGUGGGGUA AAGGCCUACC AAGGCGACGA UCCAUAGCUG GUCUGAGAGG AUGAUCAGCC
UGGUGGGGUA AAGGCUUACC AAGCCUGCGA UCUGUAGCUG GUCUGAGAGG ACGACCAGCC
AGGUGGGGUA ACGGCUCACC UAGGCGACGA UCCCUAGCUG GUCUGAGAGG AUGACCAGCC
ACAGGGGCAC UGAGACACGG GCCCCACUCC UACGGGAGGC AGCAGUGGGg AAUCUUGGAC
ACACGGGCAC UGAGACACGG GCCCGACUCC UACGGGAGGC AGCAGCAGGG AAUCUUCCGC
AGACUGGGAC UGAGACACGG CCCAGACUCC UACGGGAgGC agCAgCAAGG AAUUUUCCCC
ACAUUGGGAC UGAGACACGG CCCAAACUCC UACGGGAGGC AGCAGUGGGG AAUAUUGGAC
ACACUGGGAC UGAGACACGG CCCAGACUCC UACGGGAGGC AGCAGUGGGG AAUUUUGGAC
ACACUGGAAC UGAGACACGG UCCAGACUCC UACGGGAGGC AGCAGUGGGG AAUAUUGCAC
AAUGGGGgAA ACCCUGAUCC AGCGACGCCG CGUGCGGGAC GAAgcccUUC GGGGUGUAAA
AAUGGGGGCA ACCCUGACGG AGCGACGCCG CGUGCGGGAG GAAGCCCUUC GGGGUGUAAA
AAUGGGCGCA AGCcUGAGGG AGCAACGCCG cgUGGAGGAC GACGGccuUC GGGUUGUAAA
AAUGGGCGCA AGCCUGAUCC AGCCAUGCCG CGUGAGUGAU GAAGGCCUUA GGGUUGUAAA
AAUGGGCGAA AGCCUGAUCC AGCAAUGCCG CGUGCAGGAU GAAGGCCCUC GGGUUGUAAA
AAUGGGCGCA AGCCUGAUGC AGCCAUGCCG CGUGUAUGAA GAAGGCCUUC GGGUUGUAAA
---------- -ccgCUGUGG CGGGGGAAGA AUAAGGUAGG GAG--GAAA- -UGCCCUACC
---------- -CCGCUGUUC GGGGGGACGA ---------- -----UCGAG ----------
---------- -CUCCUUUCG GGUGGGACGA ---------- ------UGC- ----------
---------- -GCUCUUUCA CCGGAGAAGA ---------- -----UAA-- ----------
---------- -CUGCUUUUG UACGGAACGA A-AAGCCUGG GG-CUAAUAU --CCCCGGGU
---------- -GUACUUUCA GCGGGGAGGA A-GGGAGUAA AG-UUAAUAC --CUUUGCUC
GAUGACGGUA CCCCGCUAGA AAGCCCC-GG CUAACUACGU GCCAgCAgCC gCGGUAAUAC
--CGACGGUA CCCUCGGAGC AAGUCCC-GG CUAACUACGU GCCAGcAGCC GCGGUAAGAC
--UGACGGUA CCACCAGAAG CAGCCCC-GG CUAACUCUGU GCCAGCAGCC GCGGuAAGAC
--UGACGGUA UCCGGAGAAG AAGCCCC-GG CUAACUUCGU GCCAGCAGCC GCGGUAAUAC
CAUGACGGUA CCGUAAGAAU AAGCACC-GG CUAACUACGU GCCAGCAGCC GCGGUAAUAC
AUUGACGUUA CCCGCAGAAG AAGCACC-GG CUAACUCCGU GCCAGCAGCC GCGGUAAUAC
GUAG-GGGGC AAGCGUUACC CGgAUUUACU GGgCGUAAAG GGGGCGUAGG CGGCCUGGUg
GUAG-GGGGC GAGCGUUACC CgGAGUCACU GGGCGUAAAG GGCGUGUAGG CGGCUGGGUA
AGAG-GGGGc nAGCGUUGUC CGGAGUUACU GGGcGUAAAG GGCGCGCAGG CGGUGGGCUG
GAAG-GGGGC UAGCGUUGUU CGGAAUUACU GGGCGUAAAG CGCACGUAGG CGGAUAUUUA
GUAG-GGUGC AAGCGUUAAU CGGAAUUACU GGGCGUAAAG CGUGCGCAGG CGGUUUUGUA
GGAG-GGUGC AAGCGUUAAU CGGAAUUACU GGGCGUAAAG CGCACGCAGG CGGUUUGUUA
UGUCGGAUgU gAAAUCCCAC GGCUCAACCG UGGGGC-UGC AUCCGAAACU ACCAGGCUUG
CGCCGCGUGU GAAAGUCCCC GGCUCAACCG GGGAGG-GUC GCGCGGGACG GCCUGGCUCG
CGUCGGCGCU GAAAGCgccc cGCUUAACGG GGCGAG-GCG CGCCGAUACG AGUCCACUCG
AGUCAGGGGU GAAAUCCCAG AGCUCAACUC UGGAAC-UGC CUUUGAUACU GGGUAUCUUG
AGACAGUGGU GAAAUCCCCG GGCUCAACCU GGGAAC-UGC CAUUGUGACU GCAAGGCUAG
AGUCAGAUGU GAAAUCCCCG GGCUCAACCU GGGAAC-UGC AUCUGAUACU GGCAAGCUUG
GGGGCGGUAG AGGGAGACGG AACUGCCGGU GUAGGGGUgA AAUCCGUAGA UAUCGGCAGG
AGGGCGGGAG AGGCGGGUGG AAUUCCCGGU GUAGCGGUGA AAUGCGUAGA GAUCGGGAGG
AGGCAAGCAG AGGGUGGCGG AAUUCCGGGU GGAGCGGUGA AAUGCGUAGA GAUCCGGAGG
AGUAUGGAAG AGGUAAGUGG AAUUCCGAGU GUAGAGGUGA AAUUCGUAGA UAUUCGGAGG
AGUGCGGCAG AGGGGGAUGG AAUUCCGCGU GUAGCAGUGA AAUGCGUAGA UAUGCGGAGG
AGUCUCGUAG AGGGGGGUAG AAUUCCAGGU GUAGCGGUGA AAUGCGUAGA GAUCUGGAGG
AACGCCGGUG GGGAAGCCGG UCUCCUGGGC CGACCCCGAC GCUGAGGCCC GAAAGCCAGG
AACGCCGGUG GcGaAGGCGG CCCGCUGGCC CGUACCUGAC GCUGAGGCGC GAAGGCGUGG
AACgcCaGUG GGGAAGCCGG CCACCUGGGC UUGACCUGAC GCUGAggCGC gACAGCgUGG
AACGCCAGUG GCGAAGGCGG CUUACUGGUC CAUUACUGAC GCUGAGGUGC GAAAGCGUGG
AACACCGAUG GCGAAGGCAA UCCCCUGGGC CUGCACUGAC GCUCAUGCAC GAAAGCGUGG
AAUACCGGUG GCGAAGGCGG CCCCCUGGAC GAAGACUGAC GCUCAGGUGC GAAAGCGUGG
GGAGCAAACC GGAUUAGAUA CCCGGGUAGU CCUGGCUGUA AACGAUGCCC ACUAGGUGUG
GGAGCGAACC GGAUUAGAUA CCCGGGUAGU CCACGCAGUA AACGAUGCGG GCGAGGUGUG
GGAGCAAACC GGAUUAGAUA CCCGGGUAGU CCACGCCGUA AACGAUgcCG GcuCGGCGUC
GGAGCAAACA GGAUUAGAUA CCCUGGUAGU CCACGCCGUA AACGAUGAAU GUUAGCCGUC
GGAGCAAACA GGAUUAGAUA CCCUGGUAGU CCACGCCCUA AACGAUGUCA ACUGGUUGUU
GGAGCAAACA GGAUUAGAUA CCCUGGUAGU CCACGCCGUA AACGAUGUCG ACUUGGAGGU
GGGGGG---- UAA-----UC CCUCCGUGCU GAAGCUAACG CGUUAAGUGG GCCGCCUGGG
GGUGG---UG UUGACC---C CAUCCGUGCC GGCGCCAACG CAGUAAGCCC GCCGCCUGGG
UGGCGCAC-- GUUG--gUGU GCuGGGUGCC uUAGCUCACG CGGUaAGCCG gccGCCuGGG
GGGCAG---- UAUA----CU GUUCGGUGGC GCAGCUAACG CAUUAAACAU UCCGCCUGGG
GGGUC----U UAACU----G ACUCAGUAAC GAAGCUAACG CGUGAAGUUG ACCGCCUGGG
UGUGCC---C UUGA----GG CGUGGCUUCC GGAGCUAACG CGUUAAGUCG ACCGCCUGGG
GAGUACGCCC GCAAGGGUGA AACUCAAAGG AAUUGACGGG GGCCCGC-AC AAGCGgUGGA
GAGUACGGCC GCAAGGCUAA AACUCAAAGG AAUUGAcGGG GGCCCGC-AC AAGCAGCGGA
GA???????? ?????CUUAA AACUCAAAGG AAUUG????? ?????GC-AC AAG???????
GAGUACGGUC GCAAGAUUAA AACUCAAAGG AAUUGACGGG GGCCCGC-AC AAGCGgUGGA
GAGUACGGCC GCAAGGUUGA AACUCAAAGG AAUUGACGGG GACCCGC-AC AAGCGGUGGA
GAGUACGGCC GCAAGGUUAA AACUCAAAUG AAUUGACGGG GGCCCGC-AC AAGCGGUGGA
GCGUGUGGUU UAAUUGGAUG CUAAGCCAAG AACCUUACCA GGGCUUGACA UGCCGGUG-G
GCGUGUGGUU UAAUUCGACG CAACGCGAAG AACCUUACCA GGGCUUGACA UGCCACCG--
???????GUU UAAUUCGACG CAACACGAAG AACCUUACCC GGACUUGACA UGGCGCUG--
GCAUGUGGUU UAAUUCGAAG CAACgCGCAG AACCUUACCA GCUCUUGACA UU-CGGGgUU
UGAUGUGGUU UAAUUCGAUG CAACGCGAAA AACCUUACCC ACCUUUGACA UG-GCAGG--
GCAUGUGGUU UAAUUCGAUG CAACGCGAAG AACCUUACCU GGUCUUGACA UC-CACGG--
UACCUCCCCG AAAGGGGUAG GGaCCCAGUC CUUCG-GGAC UGGGAGCCGG CA--------
AACCUGGCUG AAAGGCU-GG GG-UGC---C CGGuGAGG-- -GAGCGGUGG CA--------
CAUCCCCUGG AAACAGG-gn cG-C-----C UGnCG-AG-- ---GcnGCAC CA--------
UGGGCAgUGG AGACAUU-GU CCUUC----A GUUAGGCU-- --GGCCCCAG AA--------
AACUUACCAG AGAUGGU-UU GG-UGC---U CGAAA-GA-- -GAACCUGCA CA--------
AAGUUUUCAG AGAUGAG-AA UG-UG----C CUUCG-GG-- --AACCGUGA GA--------
---------- ---------- ---------- ---------C AGGUGGUGCA CGGCCGUCGU
---------- ---------- ---------- ---------C AGGUGCUGCA UGGCUGUCGU
---------- ---------- ---------- ---------C AGGUGCUGCA UGGCUGuCGU
---------- ---------- ---------- ---------C AGGUGCUGCA UGGCUGUCGU
---------- ---------- ---------- ---------C AGGUGCUGCA UGGCUGUCGU
---------- ---------- ---------- ---------C AGGUGCUGCA UGGCUGUCGU
CAGCUCGUGC CGUGAGGUGU UGGGUUAAGU CCCGCAACGA GCGCAACCCC UGCCCCUAGU
CAGCUCGUGC CGUGAGGUGU UGGGUUAAGU CCCGCAACGA gCGCAACCCU CGGGGUCAGU
CAGCUCGUGU CGUGAGAUGu UGGGUUCAGU CCCGCAACGA GCGCAACCCG UGUCGGUAGU
CAGCUCGUGU CGUGAGAUGU UGGGUUAAGU CCCGCAACGA GCGCAACCCU CGCCCUUAGU
CAGCUCGUGU CGUGAGAUGU UGGGUUAAGU CCCGCAACGA GCGCAACCCU UGCCAUUAGU
CAGCUCGUGU UGUGAAAUGU UGGGUUAAGU CCCGCAACGA GCGCAACCCU UAUCCUUUGU
UGCCAGCGG- ----UUCGG- -----CCGGG CACUCUAGGG GGACUGCCGG CGACGAgCCG
UA----C--- ----GCGGGU -------G-- ---UCUGACC CGACUGCCGG GGAAAGCCCG
UA----C--- -----AGGU- -------G-- ---UCUACCG aGACUGccgn UG-ACCGGCG
UGCCAGCA-- ----UUUAGU ------UGGG CACUCUAAGG GGACUGCCGG UGAUAAGCCG
UGCUA-CA-- ----UUCAGU ------UGAG CACUCUAAUG GGACUGCCGG UGACAAACCG
UGCCAGCGG- ----UCCGG- -----CCGGG AACUCAAAGG AGACUGCCAG UGAUAAACUG
-GAGGAAGGA GGGGAUGACG UCAGGUACUC GUGCCCCUUA UGCCCUGGGC GACACACGCG
-GAGGAAGGA GGGGAUGACG UCAAGUCAGC AUGGCCCUGA CGCCCUGGGC GACACACACG
-GAGGAAGGc GCGGAUGACG UCAAGUCAGC AUGGCCCUUA CGUCCGGGGC GACACACACG
AGAGGAAGGU GGGGAUGACG UCAAGUCCUC AUGGCCCUUA CGGGCUGGGC UACACACGUG
-GAGGAAGGU GGGGAUGACG UCAAGUCCUC AUGGCCCUUA UAGGUGGGGC UACACACGUC
-GAGGAAGGU GGGGAUGACG UCAAGUCAUC AUGGCCCUUA CGACCAGGGC UACACACGUG
CUACAAUGGG CGGUACAAUG GGUUGCGACC CCGCGAGGGG GAGCCAAUCC CC-AAAGCCG
CUACAGUGAC CGGGACAGUG GGCAGCGAAG GGGCGACCUG GAGCCAAUCC CGCAAACCCG
CUACAAUGGC CACGACAAUG CGUUGCCAAG CCGCAAGGUG GAGCUAAUCG CCUAAACGUg
CUACAAUGGU GGUGACAGUG GGCAGCGAGA CAGCGAUGUC GAGCUAAUCU CC-AAAAGCC
AUACAAUGGC UGGUACAAAG GGUUGCCAAC CCGCGAGGGG GAGCUAAUCC CAUAAAGCCA
CUACAAUGGC GCAUACAAAG AGAAGCGACC UCGCGAGAGC AAGCGGACCU CAUAAAGUGC
CCCUCAGUUC GGAUCGCAGG CUGCAACCCG CCUGCGUGAA GCCGGAAUCG CUAGUAAUCG
GUCGUGGUGG GGAUCGCAGG CUGCAACCCG CCUGCGUGAA CGCGGAGUUG CUAGUAACCG
GUCUCAGUGC AGAnUcGGGG CUGCAACUCG CCCCCGUGAA GGCGGAGUUG CUAGUAACCG
AUCUCAGUUC GGAUUGCACU CUGCAACUCG AGUGCAUGAA GUUGGAAUCG CUAGUAAUCG
GUCGUAGUCC GGAUCGCAGU CUGCAACUCG ACUGCGUGAA GUCGGAAUCG CUAGUAAUCG
GUCGUAGUCC GGAUUGGAGU CUGCAACUCG ACUCCAUGAA GUCGGAAUCG CUAGUAAUCG
CGGAUCAGCC AUGCCGCGGU GAAUACGUUC CCGGGCCUUG UACACACCGC CCGUCACGCC
CCGGUCAGCC AUACGGCGGU GAAUACGUUC CCGGGCCUUG UACACACCGC CCGUCACGUC
CGUAUCAGCC AUGGCGCGGu GAAUACGUUC CCGGGCCUUG UACACACCGC cCgUcacGUC
CAGAUCAG-C AUGCUGCGGU GAAUACGUUC CCGGGCCUUG UACACACCGC CCGUCACACC
UGGAUCAG-A AUGUCACGGU GAAUACGUUC CCGGGUCUUG UACACACCGC CCGUCACACC
UGGAUCAG-A AUGCCACGGU GAAUACGUUC CCGGGCCUUG UACACACCGC CCGUCACACC
ACCCGAGUCG GGGGCUCCCG AAGACACCUA CCCCAACCC- -GAAA--GGG aGGGGGGGUG
ACGAAAGCUG GCUUCACCUG AAG-CuGGUG GGCCAACCGG CGCACGCUGG GGGCAGCCGU
AUGGGAGUGG CCAAUGCUUG AAG-UCCGUG UGCUAACCCC -AGUC-GGGG AGGCAGCGGC
AUGGGAGUUG GUUUUACCCG AAG-GUAGUG CGCUAACC-- -GCAA---GG AGGCAGCUAA
AUGGGAGCGG GUCUCGCCAG AAG-UAGGUA GCCUAACC-- -GUAA---GG AGGGCGCUUA
AUGGGAGUGG GUUGCAAAAG AAG-UAGGUA GCUUAACC-- -UUCG---GG AGgGCGCUUA
UCGAGGGAGA ACCUGGCGAG GGGGGCGAAG UCGUAACAAG GUAGCCGUAC CGGAAGGUGC
-CGAGGGUGG GGCUGGUGAU UGGGACGAAG UCGUAACAAG GUAGCCGUAC CGGAAGGnnn
-CGAGGGCAG GGGcCGCGAC ?????????? ??GUAACAAG ??????GUAC CGGAAG????
-CCACGGUAG GGUCAGCGAC UGGGGUGAAG UCGUAACAAG GUAGCCGUAG GGGAACCUGC
-CCACGGCGG GGUUCGUGAC UGGGGUGAAG UCGUAACAAG GUAGCCGUAU CGGAAGGUGC
-CCACUUUGU GAUUCAUGAC UGGGGUGAAG UCGUAACAAG GUAACCGUAG GGGAACCUGC
GGCUGGAUCA CCUCCUUUCU ?
nGGUGGAUCA CCUCCUUUCU ?
?????GAUCA CCUCCUUUcu a
GGCUGGAUCA CCUCCUUUCU ?
GGCUGGAUCA CCUCCUUUCU ?
GGUUGGAUCA CCUCCUUA?? ?